Detailed information of SNP:
SNP ID:
sf0516145561(Gbrowse)
Chromosome: chr05 Position: 16145561 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 97.11% | 2.89% |
All Indica | 799 | 94.87% | 5.13% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 96.00% | 4.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 87.68% | 12.32% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0516145561 | C->T | LOC_Os05g27800(LOC_Os05g27800.1) | Synonymous |