Detailed information of SNP:
|
SNP ID:
sf0516179416(Gbrowse)
Chromosome: chr05 Position: 16179416 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1326 | 96.15% | 3.85% |
| All Indica | 721 | 96.81% | 3.19% |
| All Japonica | 486 | 94.65% | 5.35% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 340 | 98.24% | 1.76% |
| Indica II | 189 | 97.35% | 2.65% |
| Indica Intermediate | 192 | 93.75% | 6.25% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 86 | 75.58% | 24.42% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516179416 | G->A | INTERGENIC | None |