Detailed information of SNP:



SNP ID: sf0516180914(Gbrowse)

Chromosome: chr05

Position: 16180914
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1414 66.05% 33.95%
All Indica794 94.33% 5.67%
All Japonica497 16.10% 83.90%
Aus67 98.51% 1.49%
Indica I375 93.87% 6.13%
Indica II212 96.23% 3.77%
Indica Intermediate207 93.24% 6.76%
Temperate Japonica335 2.69% 97.31%
Tropical Japonica94 60.64% 39.36%
Japonica Intermediate68 20.59% 79.41%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 64.29% 35.71%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0516180914 T->C LOC_Os05g27850(LOC_Os05g27850.1) Non-Synonymous SNP