Detailed information of SNP:
|
SNP ID:
sf0516180914(Gbrowse)
Chromosome: chr05 Position: 16180914 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 66.05% | 33.95% |
| All Indica | 794 | 94.33% | 5.67% |
| All Japonica | 497 | 16.10% | 83.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 207 | 93.24% | 6.76% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516180914 | T->C | LOC_Os05g27850(LOC_Os05g27850.1) | Non-Synonymous SNP |