Detailed information of SNP:
|
SNP ID:
sf0516180921(Gbrowse)
Chromosome: chr05 Position: 16180921 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 65.30% | 34.70% |
| All Indica | 792 | 93.06% | 6.94% |
| All Japonica | 497 | 16.10% | 83.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 92.99% | 7.01% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516180921 | C->T | LOC_Os05g27850(LOC_Os05g27850.1) | Synonymous |