Detailed information of SNP:
|
SNP ID:
sf0516182947(Gbrowse)
Chromosome: chr05 Position: 16182947 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 67.17% | 32.83% |
| All Indica | 788 | 96.57% | 3.43% |
| All Japonica | 494 | 15.59% | 84.41% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 371 | 95.96% | 4.04% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 65 | 16.92% | 83.08% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516182947 | A->C | LOC_Os05g27850(LOC_Os05g27850.1) | Non-Synonymous SNP |