Detailed information of SNP:
|
SNP ID:
sf0516185310(Gbrowse)
Chromosome: chr05 Position: 16185310 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 53.87% | 46.13% |
| All Indica | 790 | 81.65% | 18.35% |
| All Japonica | 495 | 14.95% | 85.05% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 368 | 88.59% | 11.41% |
| Indica II | 211 | 68.25% | 31.75% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 92 | 58.70% | 41.30% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516185310 | G->A | LOC_Os05g27860(LOC_Os05g27860.1) | SNPs that introduce stop codons |