Detailed information of SNP:
|
SNP ID:
sf0516209467(Gbrowse)
Chromosome: chr05 Position: 16209467 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 68.60% | 31.40% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 497 | 15.90% | 84.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516209467 | G->C | INTERGENIC | None |