Detailed information of SNP:
|
SNP ID:
sf0516244548(Gbrowse)
Chromosome: chr05 Position: 16244548 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1319 | 95.68% | 4.32% |
| All Indica | 710 | 92.39% | 7.61% |
| All Japonica | 489 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 320 | 85.31% | 14.69% |
| Indica II | 191 | 100.00% | 0.00% |
| Indica Intermediate | 199 | 96.48% | 3.52% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516244548 | G->T | INTERGENIC | None |