Detailed information of SNP:
|
SNP ID:
sf0516310291(Gbrowse)
Chromosome: chr05 Position: 16310291 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 51.73% | 48.27% |
| All Indica | 795 | 77.23% | 22.77% |
| All Japonica | 497 | 15.29% | 84.71% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 372 | 79.84% | 20.16% |
| Indica II | 212 | 71.70% | 28.30% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516310291 | C->A | INTERGENIC | None |