Detailed information of SNP:
|
SNP ID:
sf0516323958(Gbrowse)
Chromosome: chr05 Position: 16323958 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 91.17% | 8.83% |
| All Indica | 750 | 85.20% | 14.80% |
| All Japonica | 489 | 98.98% | 1.02% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 343 | 75.22% | 24.78% |
| Indica II | 203 | 93.60% | 6.40% |
| Indica Intermediate | 204 | 93.63% | 6.37% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516323958 | C->T | INTERGENIC | None |