Detailed information of SNP:
|
SNP ID:
sf0516346398(Gbrowse)
Chromosome: chr05 Position: 16346398 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1318 | 62.44% | 37.56% |
| All Indica | 730 | 44.11% | 55.89% |
| All Japonica | 480 | 96.04% | 3.96% |
| Aus | 57 | 17.54% | 82.46% |
| Indica I | 349 | 40.69% | 59.31% |
| Indica II | 190 | 52.11% | 47.89% |
| Indica Intermediate | 191 | 42.41% | 57.59% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 81 | 81.48% | 18.52% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516346398 | G->A | INTERGENIC | None |