Detailed information of SNP:
|
SNP ID:
sf0516359806(Gbrowse)
Chromosome: chr05 Position: 16359806 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 69.96% | 30.04% |
| All Indica | 797 | 91.84% | 8.16% |
| All Japonica | 497 | 31.19% | 68.81% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 13.73% | 86.27% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516359806 | T->C | LOC_Os05g28080(LOC_Os05g28080.1) | Non-Synonymous SNP |