Detailed information of SNP:
|
SNP ID:
sf0516362863(Gbrowse)
Chromosome: chr05 Position: 16362863 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 96.68% | 3.32% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 494 | 91.70% | 8.30% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 94.61% | 5.39% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516362863 | C->T | INTERGENIC | None |