Detailed information of SNP:
|
SNP ID:
sf0516368953(Gbrowse)
Chromosome: chr05 Position: 16368953 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 75.67% | 24.33% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 497 | 37.22% | 62.78% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516368953 | C->T | INTERGENIC | None |