Detailed information of SNP:
|
SNP ID:
sf0516441454(Gbrowse)
Chromosome: chr05 Position: 16441454 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.21% | 36.79% |
| All Indica | 799 | 64.21% | 35.79% |
| All Japonica | 497 | 55.94% | 44.06% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 55.20% | 44.80% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 73.73% | 26.27% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516441454 | G->A | INTERGENIC | None |