Detailed information of SNP:
|
SNP ID:
sf0516451091(Gbrowse)
Chromosome: chr05 Position: 16451091 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 92.46% | 7.54% |
| All Indica | 741 | 87.04% | 12.96% |
| All Japonica | 479 | 99.37% | 0.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 78.78% | 21.22% |
| Indica II | 193 | 94.82% | 5.18% |
| Indica Intermediate | 204 | 93.63% | 6.37% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516451091 | A->G | INTERGENIC | None |