Detailed information of SNP:
|
SNP ID:
sf0516506106(Gbrowse)
Chromosome: chr05 Position: 16506106 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1247 | 90.86% | 9.14% |
| All Indica | 722 | 84.76% | 15.24% |
| All Japonica | 410 | 99.51% | 0.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 325 | 73.85% | 26.15% |
| Indica II | 198 | 93.94% | 6.06% |
| Indica Intermediate | 199 | 93.47% | 6.53% |
| Temperate Japonica | 280 | 99.64% | 0.36% |
| Tropical Japonica | 74 | 98.65% | 1.35% |
| Japonica Intermediate | 56 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 94.12% | 5.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516506106 | G->A | INTERGENIC | None |