Detailed information of SNP:
|
SNP ID:
sf0516558373(Gbrowse)
Chromosome: chr05 Position: 16558373 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 68.88% | 31.12% |
| All Indica | 799 | 48.19% | 51.81% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 40.80% | 59.20% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516558373 | G->A | INTERGENIC | None |