Detailed information of SNP:
|
SNP ID:
sf0516586662(Gbrowse)
Chromosome: chr05 Position: 16586662 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 75.43% | 24.57% |
| All Indica | 780 | 57.56% | 42.44% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 48.09% | 51.91% |
| Indica II | 206 | 69.42% | 30.58% |
| Indica Intermediate | 208 | 62.50% | 37.50% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516586662 | G->A | LOC_Os05g28430(LOC_Os05g28430.1) | Non-Synonymous SNP |