Detailed information of SNP:
|
SNP ID:
sf0516597557(Gbrowse)
Chromosome: chr05 Position: 16597557 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 66.88% | 33.12% |
| All Indica | 798 | 44.11% | 55.89% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 36.80% | 63.20% |
| Indica II | 212 | 57.08% | 42.92% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516597557 | C->T | INTERGENIC | None |