Detailed information of SNP:
|
SNP ID:
sf0516613103(Gbrowse)
Chromosome: chr05 Position: 16613103 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 69.95% | 30.05% |
| All Indica | 791 | 48.42% | 51.58% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 41.02% | 58.98% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 206 | 42.23% | 57.77% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516613103 | C->T | LOC_Os05g28480(LOC_Os05g28480.1) | INTRON |