Detailed information of SNP:
|
SNP ID:
sf0516623946(Gbrowse)
Chromosome: chr05 Position: 16623946 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.36% | 41.64% |
| All Indica | 799 | 29.41% | 70.59% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 23.20% | 76.80% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 15.17% | 84.83% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516623946 | T->C | INTERGENIC | None |