Detailed information of SNP:



SNP ID: sf0516623946(Gbrowse)

Chromosome: chr05

Position: 16623946
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1417 58.36% 41.64%
All Indica799 29.41% 70.59%
All Japonica497 98.79% 1.21%
Aus67 89.55% 10.45%
Indica I375 23.20% 76.80%
Indica II213 54.46% 45.54%
Indica Intermediate211 15.17% 84.83%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 67.50% 32.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0516623946 T->C INTERGENIC None