Detailed information of SNP:
|
SNP ID:
sf0516678319(Gbrowse)
Chromosome: chr05 Position: 16678319 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 53.18% | 46.82% |
| All Indica | 796 | 85.68% | 14.32% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516678319 | C->T | INTERGENIC | None |