Detailed information of SNP:



SNP ID: sf0516697835(Gbrowse)

Chromosome: chr05

Position: 16697835
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 97.82% 2.18%
All Indica799 97.00% 3.00%
All Japonica497 98.99% 1.01%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 89.20% 10.80%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0516697835 T->C INTERGENIC None