Detailed information of SNP:
|
SNP ID:
sf0516723901(Gbrowse)
Chromosome: chr05 Position: 16723901 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1269 | 93.77% | 6.23% |
| All Indica | 655 | 88.55% | 11.45% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 283 | 81.98% | 18.02% |
| Indica II | 192 | 91.67% | 8.33% |
| Indica Intermediate | 180 | 95.56% | 4.44% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516723901 | A->G | LOC_Os05g28630(LOC_Os05g28630.1) | INTRON |