Detailed information of SNP:
|
SNP ID:
sf0516765538(Gbrowse)
Chromosome: chr05 Position: 16765538 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.99% | 49.01% |
| All Indica | 799 | 80.48% | 19.52% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516765538 | G->A | LOC_Os05g28680(LOC_Os05g28680.1) | INTRON |