Detailed information of SNP:
|
SNP ID:
sf0516781197(Gbrowse)
Chromosome: chr05 Position: 16781197 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 90.72% | 9.28% |
| All Indica | 762 | 84.12% | 15.88% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 73.56% | 26.44% |
| Indica II | 209 | 91.39% | 8.61% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516781197 | A->G | INTERGENIC | None |