Detailed information of SNP:
|
SNP ID:
sf0516824818(Gbrowse)
Chromosome: chr05 Position: 16824818 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1213 | 93.40% | 6.60% |
| All Indica | 694 | 89.34% | 10.66% |
| All Japonica | 406 | 99.51% | 0.49% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 316 | 83.86% | 16.14% |
| Indica II | 196 | 93.37% | 6.63% |
| Indica Intermediate | 182 | 94.51% | 5.49% |
| Temperate Japonica | 279 | 99.64% | 0.36% |
| Tropical Japonica | 75 | 98.67% | 1.33% |
| Japonica Intermediate | 52 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516824818 | C->T | INTERGENIC | None |