Detailed information of SNP:
|
SNP ID:
sf0516872977(Gbrowse)
Chromosome: chr05 Position: 16872977 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 68.22% | 31.78% |
| All Indica | 799 | 51.19% | 48.81% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 49.60% | 50.40% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516872977 | T->C | INTERGENIC | None |