Detailed information of SNP:
|
SNP ID:
sf0516944620(Gbrowse)
Chromosome: chr05 Position: 16944620 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 66.74% | 33.26% |
| All Indica | 797 | 52.07% | 47.93% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 45.60% | 54.40% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 209 | 54.07% | 45.93% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0516944620 | T->C | INTERGENIC | None |