Detailed information of SNP:
|
SNP ID:
sf0517081082(Gbrowse)
Chromosome: chr05 Position: 17081082 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1329 | 81.19% | 18.81% |
| All Indica | 723 | 73.58% | 26.42% |
| All Japonica | 494 | 95.75% | 4.25% |
| Aus | 58 | 53.45% | 46.55% |
| Indica I | 339 | 79.35% | 20.65% |
| Indica II | 192 | 66.15% | 33.85% |
| Indica Intermediate | 192 | 70.83% | 29.17% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517081082 | T->C | LOC_Os05g29174(LOC_Os05g29174.1) | Non-Synonymous SNP |