Detailed information of SNP:
|
SNP ID:
sf0517081091(Gbrowse)
Chromosome: chr05 Position: 17081091 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 82.80% | 17.20% |
| All Indica | 741 | 75.44% | 24.56% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 59 | 57.63% | 42.37% |
| Indica I | 347 | 81.84% | 18.16% |
| Indica II | 196 | 67.35% | 32.65% |
| Indica Intermediate | 198 | 72.22% | 27.78% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517081091 | G->A | LOC_Os05g29174(LOC_Os05g29174.1) | Non-Synonymous SNP |