Detailed information of SNP:
|
SNP ID:
sf0517081135(Gbrowse)
Chromosome: chr05 Position: 17081135 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1218 | 86.21% | 13.79% |
| All Indica | 622 | 74.92% | 25.08% |
| All Japonica | 488 | 99.59% | 0.41% |
| Aus | 59 | 94.92% | 5.08% |
| Indica I | 280 | 74.64% | 25.36% |
| Indica II | 173 | 73.99% | 26.01% |
| Indica Intermediate | 169 | 76.33% | 23.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517081135 | C->G | LOC_Os05g29174(LOC_Os05g29174.1) | Non-Synonymous SNP |