Detailed information of SNP:
SNP ID:
sf0517116390(Gbrowse)
Chromosome: chr05 Position: 17116390 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 98.17% | 1.83% |
All Indica | 799 | 97.37% | 2.63% |
All Japonica | 497 | 99.20% | 0.80% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 91.08% | 8.92% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 95.74% | 4.26% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0517116390 | T->A | LOC_Os05g29710(LOC_Os05g29710.1) | UTR_3_PRIME |