Detailed information of SNP:
|
SNP ID:
sf0517139431(Gbrowse)
Chromosome: chr05 Position: 17139431 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 52.90% | 47.10% |
| All Indica | 796 | 23.62% | 76.38% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 373 | 24.40% | 75.60% |
| Indica II | 212 | 24.53% | 75.47% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517139431 | G->C | LOC_Os05g29740(LOC_Os05g29740.1) | Synonymous |