Detailed information of SNP:
|
SNP ID:
sf0517160960(Gbrowse)
Chromosome: chr05 Position: 17160960 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.44% | 45.56% |
| All Indica | 799 | 26.78% | 73.22% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 28.00% | 72.00% |
| Indica II | 213 | 26.76% | 73.24% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517160960 | T->C | INTERGENIC | None |