Detailed information of SNP:
|
SNP ID:
sf0517203126(Gbrowse)
Chromosome: chr05 Position: 17203126 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1354 | 56.94% | 43.06% |
| All Indica | 743 | 89.77% | 10.23% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 60 | 86.67% | 13.33% |
| Indica I | 344 | 90.70% | 9.30% |
| Indica II | 201 | 90.05% | 9.95% |
| Indica Intermediate | 198 | 87.88% | 12.12% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517203126 | A->T | INTERGENIC | None |