Detailed information of SNP:
|
SNP ID:
sf0517211581(Gbrowse)
Chromosome: chr05 Position: 17211581 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 94.95% | 5.05% |
| All Indica | 791 | 94.94% | 5.06% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 61 | 59.02% | 40.98% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 206 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517211581 | C->T | LOC_Os05g29850(LOC_Os05g29850.1) | Synonymous |