Detailed information of SNP:
|
SNP ID:
sf0517262676(Gbrowse)
Chromosome: chr05 Position: 17262676 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 98.14% | 1.86% |
| All Indica | 731 | 96.58% | 3.42% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 341 | 94.13% | 5.87% |
| Indica II | 196 | 100.00% | 0.00% |
| Indica Intermediate | 194 | 97.42% | 2.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517262676 | G->C | INTERGENIC | None |