Detailed information of SNP:
|
SNP ID:
sf0517338120(Gbrowse)
Chromosome: chr05 Position: 17338120 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 64.12% | 35.88% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 496 | 6.85% | 93.15% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517338120 | A->G | LOC_Os05g30070(LOC_Os05g30070.1) | Non-Synonymous SNP |