Detailed information of SNP:
|
SNP ID:
sf0517357750(Gbrowse)
Chromosome: chr05 Position: 17357750 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 61.35% | 38.65% |
| All Indica | 791 | 96.46% | 3.54% |
| All Japonica | 496 | 6.45% | 93.55% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 370 | 96.22% | 3.78% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517357750 | T->A | LOC_Os05g30090(LOC_Os05g30090.1) | INTRON |