Detailed information of SNP:
|
SNP ID:
sf0517380805(Gbrowse)
Chromosome: chr05 Position: 17380805 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 60.63% | 39.37% |
| All Indica | 797 | 94.23% | 5.77% |
| All Japonica | 485 | 5.77% | 94.23% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 324 | 1.23% | 98.77% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517380805 | G->A | INTERGENIC | None |