Detailed information of SNP:
|
SNP ID:
sf0517439423(Gbrowse)
Chromosome: chr05 Position: 17439423 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.41% | 40.59% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517439423 | T->C | INTERGENIC | None |