Detailed information of SNP:
|
SNP ID:
sf0517477783(Gbrowse)
Chromosome: chr05 Position: 17477783 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 93.52% | 6.48% |
| All Indica | 787 | 95.30% | 4.70% |
| All Japonica | 467 | 90.79% | 9.21% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 208 | 89.42% | 10.58% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 324 | 99.69% | 0.31% |
| Tropical Japonica | 87 | 57.47% | 42.53% |
| Japonica Intermediate | 56 | 91.07% | 8.93% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517477783 | G->A | LOC_Os05g30260(LOC_Os05g30260.1) | INTRON |