Detailed information of SNP:
|
SNP ID:
sf0517522722(Gbrowse)
Chromosome: chr05 Position: 17522722 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.65% | 6.35% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 496 | 83.27% | 16.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 82.63% | 17.37% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517522722 | C->A | LOC_Os05g30340(LOC_Os05g30340.1) | INTRON |
| sf0517522722 | C->A | LOC_Os05g30340(LOC_Os05g30340.2) | SNPs that introduce initiation codons |