Detailed information of SNP:
|
SNP ID:
sf0517579884(Gbrowse)
Chromosome: chr05 Position: 17579884 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 80.38% | 19.62% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 495 | 44.65% | 55.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 22.52% | 77.48% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517579884 | A->T | LOC_Os05g30430(LOC_Os05g30430.1) | INTRON |
| sf0517579884 | A->T | LOC_Os05g30430(LOC_Os05g30430.2) | INTRON |