Detailed information of SNP:
|
SNP ID:
sf0517618430(Gbrowse)
Chromosome: chr05 Position: 17618430 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 96.37% | 3.63% |
| All Indica | 788 | 100.00% | 0.00% |
| All Japonica | 444 | 89.64% | 10.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 202 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 91.56% | 8.44% |
| Tropical Japonica | 75 | 94.67% | 5.33% |
| Japonica Intermediate | 61 | 73.77% | 26.23% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517618430 | G->T | INTERGENIC | None |