Detailed information of SNP:
|
SNP ID:
sf0517647568(Gbrowse)
Chromosome: chr05 Position: 17647568 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 84.02% | 15.98% |
| All Indica | 797 | 96.61% | 3.39% |
| All Japonica | 490 | 61.84% | 38.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 90 | 30.00% | 70.00% |
| Japonica Intermediate | 65 | 21.54% | 78.46% |
| Group VI/Aromatic | 6 | 83.33% | 16.67% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517647568 | G->A | INTERGENIC | None |