Detailed information of SNP:
|
SNP ID:
sf0517672616(Gbrowse)
Chromosome: chr05 Position: 17672616 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 82.22% | 17.78% |
| All Indica | 794 | 94.33% | 5.67% |
| All Japonica | 496 | 61.69% | 38.31% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517672616 | G->A | LOC_Os05g30610(LOC_Os05g30610.1) | Non-Synonymous SNP |