Detailed information of SNP:
|
SNP ID:
sf0517672943(Gbrowse)
Chromosome: chr05 Position: 17672943 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 50.32% | 49.68% |
| All Indica | 777 | 20.72% | 79.28% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 365 | 18.08% | 81.92% |
| Indica II | 205 | 29.76% | 70.24% |
| Indica Intermediate | 207 | 16.43% | 83.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517672943 | C->T | LOC_Os05g30610(LOC_Os05g30610.1) | Non-Synonymous SNP |